Well you have to have bin, ADX and XDF loaded in TunerPro. To Emulate you need to change Mask ID to AA, this disables checksum. Then upload bin to emulator, Verify, then Emulate. Turn key on and look for on, flash, on and then it will go off when started.

Not sure the patches apply properly when emulating? I'd have all them done before upload to emulator.

Have you set up Tools, Preferences and Data Acq/Emulation for the AutoProm? Check find hardware at startup and every time you open TP with AP attatached it will find it and beep.